You know that moment when you lift the lid and steam rises up with the scent of real cheese and herbs? This healthy mac cheese brings all that comfort without the heavy feeling after. It’s been trending because we finally figured out how to make it lighter without losing the soul.
Think creamy, dreamy mac and cheese but with butternut squash pureed right into the sauce. Adds natural sweetness and cuts the calories in half. I sneak in some cauliflower florets and fresh thyme because why not get your veggies while you’re at it? Uses half the cheese but tastes just as indulgent.
Started experimenting with lighter versions back in 2018 when my daughter wanted mac and cheese every night. The breakthrough came from roasting the squash firstcaramelizes those natural sugars. My food blog readers have been making this one for years now. The trick? Don’t skip the nutmeg in the sauce.
PrintHealthy Mac Cheese Simple Delicious Comfort Food
This Healthy Squash Mac & Cheese is a delicious and nutritious twist on a classic. Featuring butternut squash and roasted broccoli, it makes a perfect Light Mac and Cheese or Low Calorie Mac and Cheese option. Enjoy a comforting Mac and Cheese with Vegetables that’s also Whole Wheat Mac and Cheese friendly.
- Prep Time: 15 minutes
- Cook Time: 40 minutes
- Total Time: 55 minutes
- Yield: 8 Servings 1x
- Category: Dinner, Lunch, Dinner, Appetizer, Main Course
- Method: Baked
- Cuisine: American
- Diet: Standard
Ingredients
- 1 head broccoli about 2–3 cups florets
- 3 Tablespoons avocado oil divided
- salt/pepper to taste
- 16 ounces whole wheat elbows or shells or lentil/chickpea pasta of choice
- 1 pound butternut squash peeled and cubed about 4 cups
- 1 cup chicken or vegetable broth
- 1 1/2 cup milk
- 2 teaspoons garlic powder
- 1 teaspoon paprika
- 1 teaspoon onion powder
- 2 teaspoons nutritional yeast optional
- 2 1/2 cups shredded cheddar cheese
- 1/2 cup cooked bacon or protein of choice
Instructions
- Preheat the oven to 425 degrees F.
- Wash and cut the broccoli, placing it on a baking sheet.
- Drizzle with 1 Tablespoon oil and add salt/pepper to taste.
- Roast the broccoli for about 18-20 minutes until tender.
- Cook the pasta according to package directions then drain and set aside.
- Warm the remaining oil in a deep sauté pan over medium-high heat.
- Add the cubed butternut squash and sauté for about 4-6 minutes, adding salt/pepper to taste.
- Pour in the broth and bring to a simmer.
- Cover and let simmer for 15-20 minutes.
- Remove from heat, add the milk and stir.
- Blend the mixture until smooth, then return to pan over low heat.
- Add garlic powder, paprika, onion powder, nutritional yeast and salt/pepper.
- Stir in shredded cheese until completely melted into the sauce.
- Pour pasta into pan and stir until evenly coated.
- Mix in roasted broccoli and cooked bacon or protein of choice, then serve and enjoy!
Notes
- For crisp tops, broil 2–3 minutes at the end
- You can also steam the broccoli instead of roasting it if desired
- To make vegan, omit cheese and add an extra 1/2 cup plant-based milk or use vegan cheese
- Feel free to add chicken ground beef or any protein of choice
Nutrition
- Calories: 474 kcal
- Sugar: 8 g
- Sodium: 597 mg
- Fat: 24 g
- Saturated Fat: 9 g
- Unsaturated Fat: 2 g + 8 g
- Trans Fat: 1 g
- Carbohydrates: 45 g
- Fiber: 11 g
- Protein: 28 g
- Cholesterol: 44 mg
Why This Butternut Squash Mac and Cheese Will Win You Over
This healthy mac cheese feels like a warm hug but won’t leave you sluggish afterward. The butternut squash creates this naturally creamy, slightly sweet sauce that pairs beautifully with sharp cheddaryou’re getting comfort food that actually nourishes.
- The roasted broccoli adds pops of color and crunch that make each bite interesting
- Whole wheat pasta gives you more fiber and a nutty depth that complements the squash perfectly
- At 474 calories per generous serving, it’s lighter than traditional versions but still satisfying
What I love most is how the butternut squash acts as a flavor bridgeit sweetens just enough to balance the sharpness of cheddar while adding vitamins and natural creaminess. Crispy bacon bits on top? Pure indulgence that makes this feel special.
Key Ingredients That Make the Magic Happen
The secret to this mac and cheese with vegetables lies in choosing ingredients that work double dutyadding both flavor and nutrition. Butternut squash becomes your creamy base, while the roasted broccoli brings that perfect textural contrast.
| Ingredient | Why It Works | Easy Swaps |
|---|---|---|
| Butternut Squash | Creates natural creaminess and mild sweetness | Sweet potato or cauliflower |
| Whole Wheat Pasta | Adds fiber and nutty flavor | Lentil pasta for gluten-free |
| Sharp Cheddar | Bold flavor means you need less cheese | Vegan cheese or nutritional yeast |
| Broccoli | Adds crunch and vibrant color | Brussels sprouts or cauliflower |

Pro Tip: Nutritional yeast isn’t just for vegan versionsit adds a subtle umami depth that makes the cheese flavor more complex and satisfying.
How It All Comes Together
The beauty of this recipe lies in its timingeverything cooks simultaneously, so you’re not standing around waiting. While your broccoli roasts to perfection, the butternut squash simmers into silky submission.
- Start with the broccoli in the oven (18-20 minutes) since it needs the longest unattended time
- Get your pasta water boiling and cook according to package directions
- Meanwhile, sauté the cubed butternut squash until it starts caramelizing, then add broth to finish cooking
- Once squash is tender, blend it with milk into a smooth, velvety sauce. Then, stir in the sharp cheddar off the heat until melted and glossy.
The magic moment happens when you blend that cooked squash with milkit transforms into this gorgeous golden sauce that looks indulgent but feels light. Adding the cheese off the heat prevents any graininess and creates that perfect, glossy finish that coats every noodle.
Troubleshooting and Kitchen Wisdom
Even with the best intentions, kitchen hiccups happen. Here’s how to navigate the most common bumps when making this low calorie mac and cheese.
If your sauce feels too thick after blending, add milk gradually until you reach that perfect coating consistency. Too thin? Let it simmer uncovered for a few minutesthe starches will naturally thicken it up.
- Grainy cheese sauce: Make sure to remove from heat completely before adding cheese, and stir constantly
- Bland flavor: Taste and adjustadd more garlic powder, paprika, or a pinch of cayenne for warmth
- Soggy broccoli: Roast it separately and fold in at the very end to maintain that lovely texture contrast
Note: If you’re making this ahead, keep the sauce slightly looser than you wantit will thicken as it cools and when you reheat it.
Making It Your Own
This recipe is wonderfully adaptable depending on your dietary needs or what’s sitting in your fridge. The base butternut squash sauce works with so many variations.
| Dietary Need | Simple Swaps | Flavor Notes |
|---|---|---|
| Gluten-Free | Use lentil or chickpea pasta | Adds protein and earthy flavor |
| Vegan | Skip cheese, add extra nutritional yeast + plant milk | Still creamy, more nutty undertones |
| Extra Protein | Add rotisserie chicken or ground turkey | Makes it a complete meal |
| More Veggies | Try roasted cauliflower or Brussels sprouts | Different textures, same comfort |
For a skinny mac and cheese version, you can cut the cheese in half and bump up the nutritional yeastyou’ll still get that satisfying richness without the extra calories.
Serving and Storage That Actually Works
This makes a generous 8 servings, which means leftovers that taste even better the next day. The flavors meld together beautifully overnight, and reheating is simple.
Serve it straight from the pan while it’s still steamy, with maybe a simple green salad or crusty bread if you’re feeling fancy. The bacon bits on top add just enough saltiness and crunch to make each bite feel complete.
- Refrigerate: Up to 4 days in airtight containersadd a splash of milk when reheating
- Freeze: Up to 3 months, though the texture will be slightly different after thawing
- Reheat: Stovetop with a little extra milk, or microwave in 30-second intervals, stirring between
Pro Tip: If you’re meal prepping, store the roasted broccoli separately and fold it in when you reheatit keeps that perfect tender-crisp texture instead of getting mushy.
Expert Insight: The Science Behind Healthy Mac Cheese
Healthy mac cheese achieves balance by incorporating nutrient-dense ingredients like whole grains, lean proteins, or vegetables to boost fiber and vitamins without sacrificing creaminess. Choosing lower-fat dairy and smart cooking techniques can maintain flavor while cutting calories, making it a satisfying and wholesome comfort food option.
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The Story Behind My Healthy Mac & Cheese
This healthy mac & cheese recipe took several kitchens worth of trial and error before I found the right balance of creamy and light. Early attempts were too bland or too thick, but with patience and a few tweaks, I crafted a comforting meal that’s both nourishing and kid-approveda true labor of flavorful love.
FAQs ( Healthy Mac & Cheese )
How can I make this dish gluten-free?
Substitute traditional pasta with certified gluten-free pasta made from rice, corn, or quinoa. Be sure to check that other ingredients like broth or cheese do not contain gluten additives. Cooking times may vary slightly, so follow package instructions for best results.
What vegetables work well in this recipe?
Broccoli, spinach, peas, or roasted bell peppers add flavor and nutrition without overpowering the dish. Lightly steam or roast vegetables before mixing in to maintain texture. These add-ons boost fiber and vitamins, enhancing the healthy comfort food vibe.
Can I make a vegan version?
Yes, swap dairy cheese for plant-based alternatives like cashew cream or vegan cheese shreds. Use nutritional yeast for a cheesy flavor without dairy. Choose unsweetened plant milk and olive oil or vegan butter to keep the creamy texture in this meal.
How do I keep this meal light without sacrificing flavor?
Use reduced-fat cheese and whole wheat pasta to add fiber while cutting calories. Incorporate low-sodium broth and fresh herbs like thyme or parsley to enhance taste naturally. Roasting vegetables before mixing adds depth without extra fat or salt.
What are the best pastas for lower-calorie versions?
Whole wheat, chickpea, or lentil pastas are excellent choices that add protein and fiber, helping you feel full longer. These options tend to be lower in calories and carbs compared to regular pasta. Cooking al dente prevents mushiness and keeps this stir-fry satisfying.

Healthy mac cheese like this proves you don’t need to sacrifice comfort for nutrition. The butternut squash creates this silky, naturally sweet base that makes every bite feel indulgent, while those roasted broccoli florets add the perfect pop of color and crunch. You’ll love how the whole wheat pasta holds onto all that creamy goodness.
Here’s what I’ve discovered through countless kitchen experiments: add a pinch of smoked paprika to the sauce for extra warmth, or try roasted cauliflower instead of broccoli for a milder flavor. This low calorie mac and cheese reheats beautifully with just a splash of milk, and it actually tastes even better the next day when all those flavors have had time to meld together.
I’d love to see how you make this recipe your own! Snap a photo and tag me if you try any fun variationsmaybe you’ll discover the next perfect veggie combination. This is the kind of healthy comfort food that brings families together around the table, proving that nourishing meals can still feel like the warmest hug.





